Variant report

Variant	rs896597
Chromosome Location	chr15:74149006-74149007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12591520	0.83[AMR][1000 genomes]
rs12902228	0.83[AMR][1000 genomes]
rs12913601	0.83[AMR][1000 genomes]
rs1349644	0.88[AFR][1000 genomes]
rs1377061	0.83[AMR][1000 genomes]
rs1452383	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1452384	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1564238	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2053960	0.86[AFR][1000 genomes]
rs2218948	0.83[AMR][1000 genomes]
rs4886407	0.83[AMR][1000 genomes]
rs4886650	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4887167	0.83[AMR][1000 genomes]
rs7166054	0.83[AMR][1000 genomes]
rs7182368	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8031645	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs896592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs921537	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs921538	0.83[AMR][1000 genomes]
rs921540	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74147400-74149200	Weak transcription	Right Atrium	heart
2	chr15:74148200-74149400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr15:74148200-74149800	Enhancers	Thymus	Thymus
4	chr15:74148400-74150400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:74148600-74149400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr15:74148800-74149200	Enhancers	Fetal Brain Male	brain
7	chr15:74148800-74149400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:74148800-74149400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr15:74148800-74149600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr15:74148800-74149600	Enhancers	Brain Germinal Matrix	brain
11	chr15:74148800-74150000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:74149000-74149200	Enhancers	Left Ventricle	heart
13	chr15:74149000-74149400	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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