Variant report

Variant	rs12913601
Chromosome Location	chr15:74074900-74074901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74072858..74075068-chr15:74109627..74111575,2	K562	blood:
2	chr15:74067385..74071671-chr15:74073576..74076433,3	K562	blood:
3	chr15:74065767..74070891-chr15:74072493..74077043,5	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11574481	1.00[MEX][hapmap]
rs12902790	1.00[MEX][hapmap]
rs1440102	1.00[MEX][hapmap]
rs4886407	0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs4887167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166054	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178358	1.00[MEX][hapmap]
rs744617	1.00[MEX][hapmap]
rs8027445	1.00[MEX][hapmap]
rs896592	0.83[AMR][1000 genomes]
rs896597	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74061000-74076600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:74066000-74076400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:74066600-74080200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:74067600-74077400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:74068600-74078800	Weak transcription	Right Atrium	heart
6	chr15:74068600-74078800	Weak transcription	Right Ventricle	heart
7	chr15:74070600-74075000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:74071800-74076800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:74072000-74075000	Weak transcription	Esophagus	oesophagus
10	chr15:74072000-74076600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:74072600-74078800	Weak transcription	Left Ventricle	heart
12	chr15:74073600-74076000	Enhancers	Fetal Muscle Trunk	muscle
13	chr15:74073800-74076600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:74073800-74076600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:74073800-74076800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:74073800-74077400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:74073800-74078200	Enhancers	Fetal Muscle Leg	muscle
18	chr15:74074600-74075600	Enhancers	Brain Germinal Matrix	brain
19	chr15:74074600-74081400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr15:74074800-74076000	Enhancers	Fetal Lung	lung
21	chr15:74074800-74076000	Enhancers	Fetal Stomach	stomach
22	chr15:74074800-74081000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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