Variant report

Variant	rs1349644
Chromosome Location	chr15:74151044-74151045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1452383	0.88[AFR][1000 genomes]
rs1452384	0.88[AFR][1000 genomes]
rs7182368	0.87[AFR][1000 genomes]
rs72745307	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745309	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745319	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745320	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72745322	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72745335	0.80[EUR][1000 genomes]
rs744616	0.86[EUR][1000 genomes]
rs8031645	0.81[AFR][1000 genomes]
rs896592	0.88[AFR][1000 genomes]
rs896597	0.88[AFR][1000 genomes]
rs921537	0.81[AFR][1000 genomes]
rs921540	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74149400-74154400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:74149400-74154600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:74149600-74154400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:74149600-74158600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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