Variant report

Variant	rs716865
Chromosome Location	chr11:83489043-83489044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1155310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155313	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285846	0.82[AMR][1000 genomes]
rs12290852	0.96[ASN][1000 genomes]
rs2044863	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56697477	0.94[ASN][1000 genomes]
rs7116090	0.85[AMR][1000 genomes]
rs7116773	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7118583	0.86[ASN][1000 genomes]
rs7127293	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7130838	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7931558	0.87[ASN][1000 genomes]
rs7936832	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7937214	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7943895	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83482200-83489400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:83485800-83490600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:83486000-83489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:83486200-83489200	Weak transcription	NHEK	skin
5	chr11:83486200-83489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:83488000-83490400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83488000-83491000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:83488000-83491200	Weak transcription	Brain Substantia Nigra	brain
9	chr11:83488200-83491000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:83489000-83489200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links