Variant report

Variant	rs1155310
Chromosome Location	chr11:83489364-83489365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83488003..83489817-chr11:83489968..83492416,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1037353	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.88[TSI][hapmap]
rs10501546	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10501548	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs10792692	0.82[JPT][hapmap]
rs11233741	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11233751	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs1155313	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155508	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11605642	0.81[JPT][hapmap]
rs12273815	0.87[CEU][hapmap]
rs12285846	0.82[AMR][1000 genomes]
rs12290852	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[ASN][1000 genomes]
rs13377566	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs17146036	0.81[JPT][hapmap]
rs17482676	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs17548333	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs17548479	0.81[JPT][hapmap]
rs17548584	0.81[JPT][hapmap]
rs1945309	0.82[CHB][hapmap]
rs2044863	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56697477	0.94[ASN][1000 genomes]
rs6592139	0.90[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs7101642	0.80[CHB][hapmap]
rs7104950	0.90[CHB][hapmap]
rs7109065	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7109609	0.90[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap]
rs7111226	0.90[CHB][hapmap]
rs7116090	0.85[AMR][1000 genomes]
rs7116773	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7118583	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7119106	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7126086	0.80[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs7126807	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7127293	0.94[CEU][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7130838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.88[TSI][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs716865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342211	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7926468	1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs7927526	0.90[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs7931558	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7936832	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7937214	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7943895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7945102	0.89[CHB][hapmap]
rs7948831	0.90[CHB][hapmap]
rs921452	0.90[CHB][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1155310	CCDC90B	cis	parietal	SCAN
rs1155310	C11orf82	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83482200-83489400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:83485800-83490600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:83486000-83489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:83486200-83489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:83488000-83490400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83488000-83491000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:83488000-83491200	Weak transcription	Brain Substantia Nigra	brain
8	chr11:83488200-83491000	Weak transcription	Brain Angular Gyrus	brain
9	chr11:83489200-83489600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:83489200-83490800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links