Variant report

Variant	rs7926468
Chromosome Location	chr11:83541199-83541200
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1037353	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs10501546	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10501548	0.83[CEU][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap]
rs10792694	0.85[AFR][1000 genomes]
rs11233741	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11233751	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs1155310	1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs1155508	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11605642	0.81[JPT][hapmap]
rs12273815	0.90[JPT][hapmap]
rs12290852	1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap]
rs12803183	0.85[AFR][1000 genomes]
rs13377566	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1400313	0.93[LWK][hapmap];0.88[MKK][hapmap];0.93[YRI][hapmap]
rs17146036	0.81[JPT][hapmap]
rs17482676	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs17548333	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs17548479	0.81[JPT][hapmap]
rs17548584	0.81[JPT][hapmap]
rs1914203	0.83[ASW][hapmap];0.89[LWK][hapmap];0.90[YRI][hapmap]
rs1945309	0.82[CHB][hapmap]
rs2040309	0.85[AFR][1000 genomes]
rs2040313	0.85[AFR][1000 genomes]
rs2044863	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs59848766	0.89[ASN][1000 genomes]
rs6592139	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs66773965	0.81[EUR][1000 genomes]
rs7101642	0.80[CHB][hapmap]
rs7104950	0.90[CHB][hapmap]
rs7109065	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7109609	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7111226	0.90[CHB][hapmap]
rs7118583	0.90[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs7119106	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7126086	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs7126807	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7130838	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap]
rs7342211	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7926247	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7927008	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7927526	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7931558	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7937214	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7943895	1.00[CHB][hapmap]
rs7945102	0.89[CHB][hapmap]
rs7948831	0.90[CHB][hapmap]
rs921452	0.90[CHB][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7926468	ABCB8	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83535000-83546600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:83538800-83546200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:83539600-83543000	Weak transcription	HepG2	liver
4	chr11:83539600-83545400	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83539600-83545400	Weak transcription	Brain Substantia Nigra	brain
6	chr11:83539800-83545400	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83539800-83545400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:83539800-83545600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:83540000-83543000	Weak transcription	Liver	Liver
10	chr11:83540000-83545400	Weak transcription	Brain Angular Gyrus	brain

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