Variant report

Variant	rs1400313
Chromosome Location	chr11:83534623-83534624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:82964651..82967620-chr11:83532923..83535009,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10792694	0.82[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898155	0.88[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11233743	0.85[CEU][hapmap]
rs11607507	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12278023	0.88[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12278928	0.85[CEU][hapmap];0.89[TSI][hapmap]
rs12284617	0.85[CEU][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes]
rs12287601	0.87[TSI][hapmap]
rs12801433	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12801474	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12803183	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1451394	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1451395	0.80[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1451396	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1914203	0.84[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2040309	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2040313	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3793947	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3862777	0.81[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4143314	0.91[TSI][hapmap]
rs5004356	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6592140	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs6592141	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592142	0.81[CEU][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7479949	0.85[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs7924552	0.81[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7926247	0.84[ASW][hapmap];0.98[LWK][hapmap];0.86[MKK][hapmap];0.93[YRI][hapmap]
rs7926468	0.93[LWK][hapmap];0.88[MKK][hapmap];0.93[YRI][hapmap]
rs7927008	0.88[AFR][1000 genomes]
rs7938923	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes]
rs7952434	0.89[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes]
rs896313	0.91[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14634	chr11:83532806-83538775	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1400313	EED	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83527800-83539200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83529800-83537800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:83531000-83534800	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83531000-83536800	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83531600-83534800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83534600-83535000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr11:83534600-83535000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:83534600-83535000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:83534600-83535000	Enhancers	NH-A	brain
10	chr11:83534600-83535200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:83534600-83535200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:83534600-83535200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:83534600-83535200	Enhancers	HUVEC	blood vessel

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