Variant report

Variant	rs6592141
Chromosome Location	chr11:83508992-83508993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83505269..83508166-chr11:83508508..83510887,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10792694	0.86[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs10898155	0.96[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233743	0.85[CEU][hapmap]
rs11607507	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12278023	0.96[CEU][hapmap];0.80[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12278928	0.85[CEU][hapmap];0.82[GIH][hapmap];0.89[TSI][hapmap]
rs12281417	0.80[EUR][1000 genomes]
rs12284617	0.92[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12287601	0.91[TSI][hapmap]
rs12801433	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12801474	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12803183	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1400313	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1451394	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1451395	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1451396	0.85[EUR][1000 genomes]
rs1914203	0.82[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2040309	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2040313	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3793947	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3862777	0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4143314	0.85[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap]
rs5004356	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592140	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6592142	0.88[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7479949	1.00[CEU][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7924552	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7938923	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7952434	0.96[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs896313	0.85[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83507400-83511000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:83508200-83514400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83508200-83514400	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83508400-83509600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83508400-83514200	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links