Variant report

Variant	rs7924552
Chromosome Location	chr11:83530138-83530139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:82995863..82997418-chr11:83528316..83530767,2	K562	blood:

Variant related genes	Relation type
ENSG00000255234	Chromatin interaction
ENSG00000137500	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10792694	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898155	0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11607507	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12278023	0.86[JPT][hapmap];0.96[MEX][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12284617	0.82[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap]
rs12801433	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12801474	0.90[ASN][1000 genomes]
rs12803183	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1400313	0.81[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1451394	0.81[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.90[ASN][1000 genomes]
rs1451395	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1451396	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1914203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2040309	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2040313	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3793947	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3862777	0.83[CHB][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5004356	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6592140	0.81[CEU][hapmap]
rs6592141	0.81[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592142	0.81[JPT][hapmap];0.92[MEX][hapmap];0.80[AMR][1000 genomes]
rs7479949	0.81[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.84[AMR][1000 genomes]
rs7938923	0.83[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes]
rs7952434	0.87[CHB][hapmap];0.86[JPT][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83526000-83530200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:83526800-83534600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:83527200-83531200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:83527600-83530600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83527600-83532600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83527800-83530200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:83527800-83530800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:83527800-83531200	Weak transcription	Brain Anterior Caudate	brain
9	chr11:83527800-83531200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:83527800-83539200	Weak transcription	Brain Angular Gyrus	brain
11	chr11:83529200-83531000	Enhancers	Hela-S3	cervix
12	chr11:83529600-83534600	Weak transcription	NH-A	brain
13	chr11:83529800-83537800	Weak transcription	Muscle Satellite Cultured Cells	--

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