Variant report

Variant	rs12803183
Chromosome Location	chr11:83538891-83538892
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83538716..83539440-chr11:84254537..84255078,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10792694	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898155	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11607507	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12278023	0.82[EUR][1000 genomes]
rs12801433	0.85[EUR][1000 genomes]
rs12801474	0.81[AMR][1000 genomes]
rs1400313	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1451394	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1451395	0.86[EUR][1000 genomes]
rs1451396	0.86[EUR][1000 genomes]
rs1914203	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2040309	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2040313	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3793947	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3862777	0.83[EUR][1000 genomes]
rs5004356	0.83[EUR][1000 genomes]
rs6592140	0.82[AMR][1000 genomes]
rs6592141	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6592142	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7924552	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7926247	0.88[AFR][1000 genomes]
rs7926468	0.85[AFR][1000 genomes]
rs7952434	0.82[AMR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83527800-83539200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83535000-83546600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:83535400-83539000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83537400-83539200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83537800-83539800	Enhancers	NHDF-Ad	bronchial
6	chr11:83538000-83539200	Enhancers	Brain Anterior Caudate	brain
7	chr11:83538000-83539600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:83538200-83539400	Enhancers	HSMM	muscle
9	chr11:83538400-83539000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:83538600-83539000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:83538600-83539000	Flanking Active TSS	NH-A	brain
12	chr11:83538600-83539000	Enhancers	Osteobl	bone
13	chr11:83538600-83539800	Enhancers	HSMMtube	muscle
14	chr11:83538800-83539200	Enhancers	Brain Hippocampus Middle	brain
15	chr11:83538800-83539600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:83538800-83539600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:83538800-83539600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr11:83538800-83539600	Active TSS	NHLF	lung
19	chr11:83538800-83539800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:83538800-83539800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr11:83538800-83546200	Weak transcription	Rectal Smooth Muscle	rectum

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