Variant report

Variant	rs6592142
Chromosome Location	chr11:83509773-83509774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83505269..83508166-chr11:83508508..83510887,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10792694	0.83[JPT][hapmap]
rs10898155	0.92[CEU][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11233743	0.81[CEU][hapmap]
rs11607507	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12278023	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12278928	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs12281417	0.80[EUR][1000 genomes]
rs12284617	0.88[CEU][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12287601	0.81[CEU][hapmap];0.87[TSI][hapmap]
rs12801433	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12801474	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12803183	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1400313	0.81[CEU][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1451394	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1451395	0.80[EUR][1000 genomes]
rs1451396	0.80[EUR][1000 genomes]
rs1914203	0.80[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.80[TSI][hapmap];0.84[AMR][1000 genomes]
rs2040309	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2040313	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3793947	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3862777	0.92[CEU][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4143314	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs5004356	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6592140	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6592141	0.88[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7479949	0.88[CEU][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7924552	0.81[JPT][hapmap];0.92[MEX][hapmap];0.80[AMR][1000 genomes]
rs7938923	0.84[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7952434	0.84[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs896313	0.88[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83507400-83511000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:83508200-83514400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83508200-83514400	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83508400-83514200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83509600-83510800	Enhancers	Brain Hippocampus Middle	brain

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