Variant report

Variant	rs1451394
Chromosome Location	chr11:83516953-83516954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10792694	0.86[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs10898155	0.89[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11607507	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12278023	0.88[CEU][hapmap];0.87[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12284617	0.85[CEU][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.81[AMR][1000 genomes]
rs12801433	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12801474	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12803183	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1400313	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1914203	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2040309	0.80[AMR][1000 genomes]
rs2040313	0.81[AMR][1000 genomes]
rs3793947	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3862777	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5004356	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592140	0.92[CEU][hapmap];0.87[AMR][1000 genomes]
rs6592141	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592142	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7479949	0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.82[AMR][1000 genomes]
rs7924552	0.81[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.90[ASN][1000 genomes]
rs7938923	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7952434	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1451394	EED	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83514400-83518000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83514800-83518400	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83514800-83518800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:83515000-83518600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:83515200-83518200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83515200-83518800	Weak transcription	Brain Angular Gyrus	brain
7	chr11:83515400-83519000	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:83516600-83517200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:83516600-83517200	Enhancers	HepG2	liver

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