Variant report

Variant	rs1914203
Chromosome Location	chr11:83526224-83526225
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC90B-9	chr11:83525614-83526306	NONHSAT023422

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10792694	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898155	0.91[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.82[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11607507	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12278023	0.84[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12278928	0.87[TSI][hapmap]
rs12284617	0.82[CHB][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs12287601	0.80[TSI][hapmap]
rs12801433	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12801474	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12803183	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1400313	0.84[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1451394	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1451395	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1451396	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2040309	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2040313	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3793947	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3862777	0.83[CHB][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4143314	0.84[TSI][hapmap]
rs5004356	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6592140	0.82[CEU][hapmap];0.85[AMR][1000 genomes]
rs6592141	0.82[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592142	0.80[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.80[TSI][hapmap];0.84[AMR][1000 genomes]
rs7479949	0.82[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes]
rs7924552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926247	0.88[ASW][hapmap];0.93[LWK][hapmap];0.90[YRI][hapmap]
rs7926468	0.83[ASW][hapmap];0.89[LWK][hapmap];0.90[YRI][hapmap]
rs7927008	0.87[AFR][1000 genomes]
rs7938923	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7952434	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes]
rs896313	0.84[TSI][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83517200-83526400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83519600-83526600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83523800-83527800	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83524200-83527600	Enhancers	Brain Substantia Nigra	brain
5	chr11:83524800-83526800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:83525600-83527800	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:83525800-83527800	Enhancers	Brain Angular Gyrus	brain
8	chr11:83525800-83527800	Enhancers	Brain Anterior Caudate	brain
9	chr11:83526000-83530200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:83526200-83527600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:83526200-83527800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr11:83526200-83528000	Enhancers	Hela-S3	cervix

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