Variant report

Variant	rs12287601
Chromosome Location	chr11:83489888-83489889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83489470..83491654-chr11:83491935..83494460,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10898155	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs11233743	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12278023	0.81[CEU][hapmap];0.82[GIH][hapmap];0.89[TSI][hapmap]
rs12278928	0.85[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12281417	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12283611	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12284617	0.84[CEU][hapmap];0.85[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs12796763	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1400313	0.87[TSI][hapmap]
rs1914203	0.80[TSI][hapmap]
rs3862777	0.81[CEU][hapmap];0.84[GIH][hapmap];0.91[TSI][hapmap]
rs4143313	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143314	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143315	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592140	0.84[EUR][1000 genomes]
rs6592141	0.91[TSI][hapmap]
rs6592142	0.81[CEU][hapmap];0.87[TSI][hapmap]
rs715859	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7479949	0.83[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs7938923	0.86[EUR][1000 genomes]
rs7952434	0.86[EUR][1000 genomes]
rs896313	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83485800-83490600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:83488000-83490400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83488000-83491000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83488000-83491200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83488200-83491000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83489200-83490800	Enhancers	NHEK	skin
7	chr11:83489600-83490000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:83489600-83490000	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:83489600-83490200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:83489600-83491200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:83489600-83491400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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