Variant report

Variant	rs4143313
Chromosome Location	chr11:83491397-83491398
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10898155	0.80[EUR][1000 genomes]
rs11233743	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12278023	0.82[EUR][1000 genomes]
rs12278928	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12281417	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12283611	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12284617	0.93[EUR][1000 genomes]
rs12287601	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12796763	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3862777	0.81[EUR][1000 genomes]
rs4143314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5004356	0.81[EUR][1000 genomes]
rs6592140	0.88[EUR][1000 genomes]
rs715859	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7479949	0.88[EUR][1000 genomes]
rs7938923	0.89[EUR][1000 genomes]
rs7952434	0.89[EUR][1000 genomes]
rs896313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83489600-83491400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:83490000-83491800	Enhancers	Brain Hippocampus Middle	brain
3	chr11:83490800-83491400	Flanking Active TSS	NHEK	skin
4	chr11:83491000-83491800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:83491000-83492000	Enhancers	Brain Angular Gyrus	brain
6	chr11:83491000-83492600	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:83491200-83492400	Enhancers	Brain Substantia Nigra	brain
8	chr11:83491200-83492600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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