Variant report

Variant	rs896313
Chromosome Location	chr11:83490973-83490974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83489470..83491654-chr11:83491935..83494460,2	K562	blood:
2	chr11:83488003..83489817-chr11:83489968..83492416,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10898155	0.89[CEU][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs11233743	0.92[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12278023	0.89[CEU][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs12278928	0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12281417	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12283611	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12284617	0.92[CEU][hapmap];0.87[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs12287601	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12796763	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1400313	0.91[TSI][hapmap]
rs1914203	0.84[TSI][hapmap]
rs3862777	0.88[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs4143313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4143314	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4143315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5004356	0.82[EUR][1000 genomes]
rs6592140	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs6592141	0.85[CEU][hapmap];0.82[GIH][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs6592142	0.88[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs715859	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7479949	0.85[CEU][hapmap];0.85[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs7938923	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs7952434	0.81[CEU][hapmap];0.90[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83488000-83491000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83488000-83491200	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83488200-83491000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:83489600-83491200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:83489600-83491400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:83490000-83491800	Enhancers	Brain Hippocampus Middle	brain
7	chr11:83490400-83491000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:83490600-83491200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:83490800-83491000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:83490800-83491400	Flanking Active TSS	NHEK	skin

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