Variant report

Variant	rs17482676
Chromosome Location	chr11:83466751-83466752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83465597..83467714-chr11:83469852..83471903,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1037353	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10501546	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10501548	0.88[JPT][hapmap]
rs11233741	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs11233751	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1155310	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1155508	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs11605642	0.89[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs12225687	0.80[CHB][hapmap]
rs12285846	0.93[ASN][1000 genomes]
rs12290852	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs12718483	0.83[ASN][1000 genomes]
rs13377566	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs17146036	0.89[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs17482520	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17548333	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17548479	0.87[CEU][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs17548584	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs1945309	0.91[CHB][hapmap]
rs2044863	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs56286239	0.81[ASN][1000 genomes]
rs57450388	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57545594	0.83[ASN][1000 genomes]
rs57681765	0.84[ASN][1000 genomes]
rs6592139	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs66509934	0.91[ASN][1000 genomes]
rs66671165	0.91[ASN][1000 genomes]
rs66685127	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66768024	0.91[ASN][1000 genomes]
rs67816311	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101642	0.91[CHB][hapmap]
rs7104950	1.00[CHB][hapmap]
rs7109065	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7109609	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs7111226	1.00[CHB][hapmap]
rs7118583	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7119106	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs7126086	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7126807	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7130838	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs72954544	0.91[ASN][1000 genomes]
rs72954570	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72954588	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72954590	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7342211	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7342212	0.86[ASN][1000 genomes]
rs73511043	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7926468	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7927526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7931558	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7937214	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7943895	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7945102	1.00[CHB][hapmap]
rs7946060	0.81[CHB][hapmap]
rs7948831	1.00[CHB][hapmap]
rs921452	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3495715	chr11:83463604-83468952	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv2589653	chr11:83463955-83468471	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3495710	chr11:83464004-83468952	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3495719	chr11:83464306-83468455	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1959476	chr11:83464474-83468109	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3463475	chr11:83464523-83468031	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3495717	chr11:83464545-83468026	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3463453	chr11:83464561-83468017	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3495716	chr11:83464566-83468004	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3495713	chr11:83464571-83467968	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3463442	chr11:83464573-83467992	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3463431	chr11:83464589-83467965	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3495712	chr11:83464595-83467965	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3495711	chr11:83464597-83467967	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3463464	chr11:83464642-83467922	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3495714	chr11:83464652-83467922	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3463486	chr11:83464656-83467920	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3495720	chr11:83464656-83467920	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv15304	chr11:83464992-83467903	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv2544219	chr11:83465802-83467802	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83460800-83471800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:83461200-83472000	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links