Variant report

Variant	rs7109609
Chromosome Location	chr11:83479808-83479809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1037353	0.89[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs10501546	0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10501548	0.81[JPT][hapmap]
rs10898152	0.91[GIH][hapmap];0.81[LWK][hapmap]
rs11233731	0.91[GIH][hapmap];0.83[JPT][hapmap];0.84[LWK][hapmap]
rs11233734	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11233741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11233751	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1155310	0.90[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap]
rs1155508	0.82[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11600452	0.83[ASN][1000 genomes]
rs11605075	0.85[ASN][1000 genomes]
rs11605642	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11822921	0.85[ASN][1000 genomes]
rs12285846	0.85[ASN][1000 genomes]
rs12290852	0.90[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap]
rs12291851	0.85[ASN][1000 genomes]
rs12718483	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12802930	0.85[ASN][1000 genomes]
rs13377566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1451397	0.83[JPT][hapmap]
rs17146036	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17159816	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17159818	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17482520	0.80[ASN][1000 genomes]
rs17482676	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs17548333	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs17548479	0.81[JPT][hapmap]
rs17548584	0.81[JPT][hapmap]
rs1945309	0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2040307	0.88[ASN][1000 genomes]
rs2044863	0.90[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2044864	0.88[ASN][1000 genomes]
rs56286239	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57450388	0.99[ASN][1000 genomes]
rs57681765	0.89[ASN][1000 genomes]
rs6592139	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66509934	0.82[ASN][1000 genomes]
rs66671165	0.82[ASN][1000 genomes]
rs66685127	0.89[ASN][1000 genomes]
rs66768024	0.82[ASN][1000 genomes]
rs67816311	0.89[ASN][1000 genomes]
rs7101642	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7104950	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7109065	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7111226	0.83[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];0.86[MKK][hapmap];0.86[ASN][1000 genomes]
rs7116090	0.87[ASN][1000 genomes]
rs7118583	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7119106	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7126086	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7126807	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7130838	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs72954544	0.82[ASN][1000 genomes]
rs72954555	0.85[ASN][1000 genomes]
rs72954570	0.82[ASN][1000 genomes]
rs72954588	0.89[ASN][1000 genomes]
rs72954590	0.89[ASN][1000 genomes]
rs7342211	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs73511043	0.89[ASN][1000 genomes]
rs7926247	0.91[JPT][hapmap]
rs7926468	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7927526	0.88[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7931407	0.82[JPT][hapmap]
rs7931558	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7937214	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7943895	0.90[CHB][hapmap]
rs7945102	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7946060	0.83[ASW][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7948831	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7950988	0.83[JPT][hapmap]
rs921452	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7109609	CREBZF	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83472800-83481400	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83473200-83482400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83479600-83480200	Enhancers	Brain Substantia Nigra	brain
4	chr11:83479800-83480600	Enhancers	Brain Hippocampus Middle	brain
5	chr11:83479800-83485200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links