Variant report

Variant	rs7111226
Chromosome Location	chr11:83437714-83437715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:83437463-83438118	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
DLG2	TF binding region

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1037353	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs10501545	0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10501546	0.90[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10792691	0.82[AMR][1000 genomes]
rs10792692	0.82[JPT][hapmap]
rs10898148	0.82[ASW][hapmap];0.84[JPT][hapmap]
rs10898149	0.82[AMR][1000 genomes]
rs10898150	0.82[JPT][hapmap]
rs10898151	0.80[AMR][1000 genomes]
rs10898152	0.83[ASW][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.81[LWK][hapmap]
rs11233711	0.82[JPT][hapmap]
rs11233720	0.80[AMR][1000 genomes]
rs11233723	0.80[AMR][1000 genomes]
rs11233730	0.82[JPT][hapmap]
rs11233731	0.83[ASW][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.83[LWK][hapmap];0.84[ASN][1000 genomes]
rs11233734	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233741	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs11233751	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs1155310	0.90[CHB][hapmap]
rs1155508	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11600452	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11604822	0.84[AMR][1000 genomes]
rs11605075	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11605382	0.82[JPT][hapmap]
rs11605642	0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs11822921	0.99[ASN][1000 genomes]
rs12223210	0.82[JPT][hapmap]
rs12225388	0.84[JPT][hapmap]
rs12225687	0.83[JPT][hapmap]
rs12290852	0.90[CHB][hapmap]
rs12291851	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12718483	0.95[ASN][1000 genomes]
rs12802930	0.90[ASN][1000 genomes]
rs13377566	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1451397	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs17146036	0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs17159816	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17159818	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17482520	0.85[ASN][1000 genomes]
rs17482676	1.00[CHB][hapmap]
rs17548333	1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs1945309	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.99[ASN][1000 genomes]
rs2044863	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs34258008	0.82[AMR][1000 genomes]
rs35508643	0.84[ASN][1000 genomes]
rs57450388	0.85[ASN][1000 genomes]
rs57545594	0.88[ASN][1000 genomes]
rs57681765	0.93[ASN][1000 genomes]
rs6592139	0.83[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];0.87[MKK][hapmap];0.86[ASN][1000 genomes]
rs66509934	0.86[ASN][1000 genomes]
rs66671165	0.86[ASN][1000 genomes]
rs66768024	0.86[ASN][1000 genomes]
rs7101642	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7104950	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7109065	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs7109609	0.83[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];0.86[MKK][hapmap];0.86[ASN][1000 genomes]
rs7118583	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7119106	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7126086	0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7126807	0.90[CHB][hapmap]
rs7130838	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs72954544	0.86[ASN][1000 genomes]
rs72954555	0.90[ASN][1000 genomes]
rs72954570	0.86[ASN][1000 genomes]
rs7342211	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7342212	0.91[ASN][1000 genomes]
rs73511043	0.93[ASN][1000 genomes]
rs7926247	0.82[JPT][hapmap]
rs7926468	0.90[CHB][hapmap]
rs7927526	0.94[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.86[ASN][1000 genomes]
rs7931407	0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7931558	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7931662	0.80[AMR][1000 genomes]
rs7933908	0.83[JPT][hapmap]
rs7937214	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7943895	0.90[CHB][hapmap]
rs7945102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7946060	0.88[ASW][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7948831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948906	0.87[ASN][1000 genomes]
rs7949241	0.90[ASN][1000 genomes]
rs7950988	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs921452	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83431600-83437800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83436600-83437800	Weak transcription	Pancreas	Pancrea
3	chr11:83436600-83438000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:83436600-83438000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:83436800-83437800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:83436800-83438400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:83436800-83439400	Weak transcription	Fetal Lung	lung
8	chr11:83437000-83437800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:83437000-83437800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:83437000-83438000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr11:83437000-83438400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:83437000-83439200	Weak transcription	Brain Angular Gyrus	brain
13	chr11:83437000-83439200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:83437000-83439400	Weak transcription	Brain Anterior Caudate	brain
15	chr11:83437000-83439600	Weak transcription	Brain Substantia Nigra	brain
16	chr11:83437200-83437800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:83437200-83438000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr11:83437200-83439200	Weak transcription	Brain Hippocampus Middle	brain
19	chr11:83437200-83439400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:83437400-83438200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:83437600-83437800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:83437600-83437800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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