Variant report

Variant	rs11604822
Chromosome Location	chr11:83403733-83403734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83396661..83398511-chr11:83401392..83404007,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10501545	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792691	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792692	0.85[ASN][1000 genomes]
rs10898148	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10898149	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898150	0.85[ASN][1000 genomes]
rs10898151	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898152	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233711	0.86[ASN][1000 genomes]
rs11233718	0.89[ASN][1000 genomes]
rs11233719	0.91[ASN][1000 genomes]
rs11233720	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233721	0.81[ASN][1000 genomes]
rs11233722	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233723	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233724	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11233725	0.85[ASN][1000 genomes]
rs11233726	0.85[ASN][1000 genomes]
rs11233730	0.85[ASN][1000 genomes]
rs11233731	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11233734	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11600452	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11605075	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11605382	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12222455	0.89[ASN][1000 genomes]
rs12223210	0.85[ASN][1000 genomes]
rs12225388	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12225390	0.91[ASN][1000 genomes]
rs12225687	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1451397	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17159816	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17159818	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34258008	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35508643	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs645596	0.88[AFR][1000 genomes]
rs67463881	0.88[ASN][1000 genomes]
rs7101642	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7111226	0.84[AMR][1000 genomes]
rs7927165	0.86[ASN][1000 genomes]
rs7931407	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931662	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7933581	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7933908	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7946060	0.81[ASN][1000 genomes]
rs7948831	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7950988	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83393000-83403800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:83394000-83404400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:83399600-83404200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:83400400-83404800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:83400800-83404200	Weak transcription	Hela-S3	cervix
6	chr11:83401400-83405800	Enhancers	Fetal Heart	heart
7	chr11:83401800-83404800	Enhancers	Brain Angular Gyrus	brain
8	chr11:83402000-83405800	Enhancers	Brain Hippocampus Middle	brain
9	chr11:83402000-83407200	Enhancers	Brain Anterior Caudate	brain
10	chr11:83402200-83406600	Enhancers	Brain Substantia Nigra	brain
11	chr11:83402600-83403800	Weak transcription	NHEK	skin
12	chr11:83402800-83403800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:83402800-83404200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:83402800-83404400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:83402800-83404400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:83402800-83405200	Weak transcription	Stomach Mucosa	stomach
17	chr11:83402800-83405800	Enhancers	Fetal Lung	lung
18	chr11:83402800-83409800	Weak transcription	Psoas Muscle	Psoas
19	chr11:83402800-83413000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:83403000-83403800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:83403000-83403800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:83403000-83404200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:83403000-83404200	Weak transcription	Fetal Brain Male	brain
24	chr11:83403000-83404400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:83403000-83404400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:83403000-83404600	Weak transcription	Fetal Intestine Small	intestine
27	chr11:83403000-83405000	Weak transcription	Fetal Intestine Large	intestine
28	chr11:83403000-83405200	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:83403000-83409800	Weak transcription	Pancreas	Pancrea
30	chr11:83403200-83404200	Weak transcription	Right Atrium	heart
31	chr11:83403200-83404600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:83403600-83404400	Enhancers	HUES6 Cell Line	embryonic stem cell

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