Variant report

Variant	rs11605382
Chromosome Location	chr11:83404525-83404526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1037353	0.82[JPT][hapmap]
rs10501545	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10501546	0.82[JPT][hapmap]
rs10792691	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10792692	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10898149	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10898150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898151	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10898152	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11233711	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233718	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233719	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233720	0.91[ASN][1000 genomes]
rs11233721	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11233722	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11233723	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11233724	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233725	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233731	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11233751	0.82[JPT][hapmap]
rs11604822	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11822921	0.81[EUR][1000 genomes]
rs12222455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12223210	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12225388	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12225390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12273560	0.81[CEU][hapmap]
rs12275022	0.81[CEU][hapmap]
rs12282021	0.81[CEU][hapmap]
rs12291851	0.82[AMR][1000 genomes]
rs1451397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17548333	0.81[JPT][hapmap]
rs1945309	0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs2044863	0.82[JPT][hapmap]
rs2374447	0.81[CEU][hapmap]
rs34258008	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35508643	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57545594	0.81[EUR][1000 genomes]
rs67463881	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7101642	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7104950	0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs7111226	0.82[JPT][hapmap]
rs7118583	0.82[JPT][hapmap]
rs7130838	0.82[JPT][hapmap]
rs7342211	0.91[JPT][hapmap]
rs7927165	0.84[CEU][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7931407	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7931558	0.82[JPT][hapmap]
rs7931662	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7933581	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7933908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7937214	0.82[JPT][hapmap]
rs7945102	0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs7946060	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7948831	0.82[JPT][hapmap]
rs7948906	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7949241	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7950988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs921452	0.82[JPT][hapmap]
rs9734327	0.81[CEU][hapmap]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83400400-83404800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:83401400-83405800	Enhancers	Fetal Heart	heart
3	chr11:83401800-83404800	Enhancers	Brain Angular Gyrus	brain
4	chr11:83402000-83405800	Enhancers	Brain Hippocampus Middle	brain
5	chr11:83402000-83407200	Enhancers	Brain Anterior Caudate	brain
6	chr11:83402200-83406600	Enhancers	Brain Substantia Nigra	brain
7	chr11:83402800-83405200	Weak transcription	Stomach Mucosa	stomach
8	chr11:83402800-83405800	Enhancers	Fetal Lung	lung
9	chr11:83402800-83409800	Weak transcription	Psoas Muscle	Psoas
10	chr11:83402800-83413000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:83403000-83404600	Weak transcription	Fetal Intestine Small	intestine
12	chr11:83403000-83405000	Weak transcription	Fetal Intestine Large	intestine
13	chr11:83403000-83405200	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:83403000-83409800	Weak transcription	Pancreas	Pancrea
15	chr11:83403200-83404600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:83403800-83404600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr11:83403800-83405400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr11:83403800-83406000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:83403800-83406000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:83403800-83406000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr11:83404200-83404800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr11:83404200-83405000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:83404200-83405200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr11:83404200-83405200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:83404200-83405400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr11:83404200-83405400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:83404200-83405400	Enhancers	Right Atrium	heart
28	chr11:83404200-83405400	Enhancers	Hela-S3	cervix
29	chr11:83404200-83405600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr11:83404200-83405600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:83404200-83405800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:83404200-83406000	Enhancers	Brain Cingulate Gyrus	brain
33	chr11:83404400-83404600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:83404400-83404600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr11:83404400-83404600	Enhancers	Fetal Brain Male	brain
36	chr11:83404400-83404600	Enhancers	Left Ventricle	heart
37	chr11:83404400-83404600	Enhancers	HUVEC	blood vessel
38	chr11:83404400-83404600	Flanking Active TSS	NHEK	skin
39	chr11:83404400-83404800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr11:83404400-83405200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:83404400-83405400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:83404400-83405400	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr11:83404400-83405600	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr11:83404400-83405800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr11:83404400-83405800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:83404400-83406000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:83404400-83406000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:83404400-83406000	Enhancers	HMEC	breast

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