Variant report

Variant	rs2374447
Chromosome Location	chr11:83354542-83354543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:83354403-83354581	GM12891	blood:	n/a	chr11:83354507-83354520
2	POLR2A	chr11:83354177-83354618	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000255311	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11233696	0.81[CEU][hapmap]
rs11233698	0.81[CEU][hapmap]
rs11233703	0.82[JPT][hapmap]
rs11233704	0.85[YRI][hapmap]
rs11233705	0.82[JPT][hapmap]
rs11233711	0.84[CEU][hapmap]
rs11233726	0.81[CEU][hapmap]
rs11233730	0.81[CEU][hapmap]
rs11605382	0.81[CEU][hapmap]
rs12223210	0.81[CEU][hapmap]
rs12225687	0.81[CEU][hapmap]
rs12273560	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12273967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275022	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12275254	0.82[JPT][hapmap]
rs12276903	0.81[CEU][hapmap]
rs12280583	0.81[CEU][hapmap]
rs12282021	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12282317	0.81[CEU][hapmap]
rs12291033	0.81[CEU][hapmap]
rs12291743	0.81[CEU][hapmap]
rs12293731	0.81[CEU][hapmap]
rs1367980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1432048	0.81[CEU][hapmap]
rs17545474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2060147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116477	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143852	0.82[JPT][hapmap]
rs4480567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs536489	0.82[JPT][hapmap]
rs58847848	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs609948	0.82[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs616414	0.82[JPT][hapmap]
rs617335	0.82[JPT][hapmap]
rs7101642	0.81[CEU][hapmap]
rs7105588	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs7131460	0.82[JPT][hapmap]
rs725192	0.81[CEU][hapmap]
rs7933908	0.81[CEU][hapmap]
rs7949429	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs919663	0.81[CEU][hapmap]
rs9734327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs983589	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs983590	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs984759	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984760	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83341000-83357200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83351200-83355200	Enhancers	Hela-S3	cervix
3	chr11:83352000-83357200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:83353000-83357600	Weak transcription	Fetal Brain Male	brain
5	chr11:83353200-83357200	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83353400-83354600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:83353800-83354800	Enhancers	GM12878-XiMat	blood
8	chr11:83353800-83357600	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links