Variant report

Variant	rs12225687
Chromosome Location	chr11:83406073-83406074
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10501545	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10792691	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10792692	0.95[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898149	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10898150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898151	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10898152	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11233711	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11233718	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11233719	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233720	0.99[ASN][1000 genomes]
rs11233721	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11233722	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11233723	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11233724	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233725	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233730	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233731	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11233741	0.80[CHB][hapmap]
rs11604822	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11605382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11822921	0.82[EUR][1000 genomes]
rs12222455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12223210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12225388	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12273560	0.81[CEU][hapmap]
rs12275022	0.81[CEU][hapmap]
rs12282021	0.81[CEU][hapmap]
rs12291851	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13377566	0.80[CHB][hapmap]
rs1451397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17482676	0.80[CHB][hapmap]
rs17548333	0.80[CHB][hapmap]
rs1945309	0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs2374447	0.81[CEU][hapmap]
rs34258008	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35508643	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57545594	0.82[EUR][1000 genomes]
rs67463881	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7101642	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7104950	0.80[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7109065	0.80[CHB][hapmap]
rs7111226	0.83[JPT][hapmap]
rs7119106	0.80[CHB][hapmap]
rs7342211	0.80[CHB][hapmap]
rs7342212	0.81[EUR][1000 genomes]
rs7927165	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7931407	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7931662	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7933581	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7933908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7945102	0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7946060	1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7948831	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs7948906	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7949241	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7950988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs921452	0.80[CHB][hapmap]
rs9734327	0.81[CEU][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83402000-83407200	Enhancers	Brain Anterior Caudate	brain
2	chr11:83402200-83406600	Enhancers	Brain Substantia Nigra	brain
3	chr11:83402800-83409800	Weak transcription	Psoas Muscle	Psoas
4	chr11:83402800-83413000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:83403000-83409800	Weak transcription	Pancreas	Pancrea
6	chr11:83404600-83406200	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:83405400-83406600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr11:83405400-83417400	Weak transcription	Hela-S3	cervix
9	chr11:83406000-83406200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:83406000-83406400	Enhancers	Brain Hippocampus Middle	brain
11	chr11:83406000-83407000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr11:83406000-83409800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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