Variant report

Variant	rs7946060
Chromosome Location	chr11:83433967-83433968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1037353	0.82[JPT][hapmap]
rs10501545	0.85[CEU][hapmap];0.84[JPT][hapmap];0.85[YRI][hapmap];0.83[ASN][1000 genomes]
rs10501546	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10792691	0.81[ASN][1000 genomes]
rs10792692	0.94[CEU][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10898148	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898150	1.00[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10898152	0.94[ASW][hapmap];0.85[CEU][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.85[YRI][hapmap]
rs11233711	0.95[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs11233718	0.94[EUR][1000 genomes]
rs11233719	0.94[EUR][1000 genomes]
rs11233720	0.81[ASN][1000 genomes]
rs11233721	0.84[EUR][1000 genomes]
rs11233724	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11233725	0.95[EUR][1000 genomes]
rs11233726	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11233730	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11233731	0.94[ASW][hapmap];0.85[CEU][hapmap];0.82[CHD][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs11233734	0.95[ASN][1000 genomes]
rs11233741	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11233751	0.82[JPT][hapmap]
rs1155508	0.82[ASW][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs11600452	0.91[ASN][1000 genomes]
rs11604822	0.81[ASN][1000 genomes]
rs11605075	0.94[ASN][1000 genomes]
rs11605382	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11605642	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11822921	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12222455	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12223210	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes]
rs12225388	0.88[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12225390	1.00[CEU][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes]
rs12225687	1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12291851	0.96[ASN][1000 genomes]
rs12718483	0.92[ASN][1000 genomes]
rs12802930	0.87[ASN][1000 genomes]
rs13377566	0.81[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1451397	1.00[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17146036	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs17159816	0.95[ASN][1000 genomes]
rs17159818	0.95[ASN][1000 genomes]
rs17482520	0.84[ASN][1000 genomes]
rs17482676	0.81[CHB][hapmap]
rs17548333	0.81[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1945309	0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2044863	0.82[JPT][hapmap]
rs35508643	0.86[ASN][1000 genomes]
rs57450388	0.84[ASN][1000 genomes]
rs57545594	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57681765	0.93[ASN][1000 genomes]
rs645596	0.82[YRI][hapmap]
rs6592139	0.83[ASW][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs66509934	0.85[ASN][1000 genomes]
rs66671165	0.85[ASN][1000 genomes]
rs66768024	0.85[ASN][1000 genomes]
rs67463881	0.96[EUR][1000 genomes]
rs7101642	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7104950	0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7109065	0.81[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs7109609	0.83[ASW][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7111226	0.88[ASW][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7118583	0.82[JPT][hapmap]
rs7119106	0.81[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7126086	0.84[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7130838	0.82[JPT][hapmap]
rs72954544	0.85[ASN][1000 genomes]
rs72954555	0.87[ASN][1000 genomes]
rs72954570	0.85[ASN][1000 genomes]
rs7342211	0.81[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7342212	0.88[ASN][1000 genomes]
rs73511043	0.93[ASN][1000 genomes]
rs7926247	0.82[JPT][hapmap]
rs7927165	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7927526	0.83[ASW][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7931407	0.85[CEU][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs7931558	0.82[JPT][hapmap]
rs7933581	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7933908	1.00[CEU][hapmap];0.83[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7937214	0.82[JPT][hapmap]
rs7945102	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7948831	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7948906	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7949241	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7950988	0.88[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs921452	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83425200-83435000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83425200-83435000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83425200-83435200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:83425400-83435200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83429200-83434800	Weak transcription	Fetal Intestine Large	intestine
6	chr11:83429200-83435000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83431400-83434800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:83431400-83435000	Enhancers	Hela-S3	cervix
9	chr11:83431600-83434000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:83431600-83434000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr11:83431600-83434200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:83431600-83434800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:83431600-83437800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:83432000-83436200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:83432200-83435000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:83432600-83435200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:83432600-83435600	Weak transcription	Brain Substantia Nigra	brain
18	chr11:83432800-83435400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:83432800-83435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:83433000-83435200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:83433200-83435000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:83433400-83434000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr11:83433400-83434400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr11:83433600-83434000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:83433800-83434200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:83433800-83434600	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:83433800-83434800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:83433800-83435200	Weak transcription	H1 Cell Line	embryonic stem cell

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