Variant report

Variant	rs645596
Chromosome Location	chr11:83399413-83399414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10501545	0.96[YRI][hapmap]
rs10898148	0.96[YRI][hapmap]
rs10898152	0.81[GIH][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap]
rs11233708	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[MEX][hapmap];0.85[ASN][1000 genomes]
rs11233709	0.85[ASN][1000 genomes]
rs11233714	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs11233720	0.92[AFR][1000 genomes]
rs11233731	0.81[GIH][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap]
rs11604822	0.88[AFR][1000 genomes]
rs12098926	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12223386	0.85[ASN][1000 genomes]
rs12226177	0.84[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs12275254	0.87[MEX][hapmap]
rs1367980	0.86[MEX][hapmap]
rs17545474	0.80[MEX][hapmap]
rs1868892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2060147	0.86[MEX][hapmap]
rs2443455	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4480567	0.86[MEX][hapmap]
rs587103	0.92[CEU][hapmap];0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs604276	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs604787	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs617859	0.86[ASN][1000 genomes]
rs633338	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs641737	0.96[ASN][1000 genomes]
rs650206	0.81[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap]
rs6592137	0.84[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6592138	0.84[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs668025	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs688414	0.85[ASN][1000 genomes]
rs7101642	0.96[YRI][hapmap]
rs7105588	0.93[MEX][hapmap]
rs7106608	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7109939	0.81[ASN][1000 genomes]
rs7125165	0.81[CEU][hapmap];0.87[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap]
rs7131460	0.87[MEX][hapmap]
rs7927393	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7928379	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7931407	0.96[YRI][hapmap]
rs7933908	0.96[YRI][hapmap]
rs7946060	0.82[YRI][hapmap]
rs7946175	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7950988	0.96[YRI][hapmap]
rs7952084	0.92[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83393000-83403800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:83393600-83402400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83393600-83402400	Weak transcription	Pancreas	Pancrea
4	chr11:83393800-83401800	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83394000-83402400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83394000-83404400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:83394200-83400200	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:83394200-83402600	Weak transcription	Left Ventricle	heart
9	chr11:83394400-83399800	Weak transcription	Fetal Heart	heart
10	chr11:83394400-83402000	Weak transcription	Brain Anterior Caudate	brain
11	chr11:83394400-83402600	Weak transcription	Fetal Brain Male	brain
12	chr11:83395600-83400000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:83398800-83399600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:83398800-83399600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:83398800-83399600	Enhancers	Brain Substantia Nigra	brain
16	chr11:83399400-83400200	Enhancers	Brain Cingulate Gyrus	brain

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