Variant report

Variant	rs1868892
Chromosome Location	chr11:83391191-83391192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11233708	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs11233709	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11233714	0.85[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs12098926	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12223386	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12226177	0.85[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2443455	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587103	0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs604276	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs604787	0.96[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs617859	0.92[ASN][1000 genomes]
rs633338	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs641737	0.96[ASN][1000 genomes]
rs645596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs650206	0.80[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6592137	0.85[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs6592138	0.85[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs668025	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs688414	0.80[ASN][1000 genomes]
rs7106608	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109939	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7125165	0.80[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7927393	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7928379	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7946175	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952084	0.92[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83374800-83392000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:83386200-83391600	Weak transcription	Hela-S3	cervix
3	chr11:83387800-83391800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:83387800-83392200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:83389200-83392400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:83389600-83393400	Active TSS	Fetal Brain Female	brain
7	chr11:83389800-83391400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:83389800-83392000	Weak transcription	Brain Substantia Nigra	brain
9	chr11:83390200-83391400	Weak transcription	Brain Angular Gyrus	brain
10	chr11:83390200-83391800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:83390200-83392000	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:83390800-83391600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:83390800-83393200	Active TSS	Brain Anterior Caudate	brain
14	chr11:83390800-83394400	Enhancers	Fetal Heart	heart
15	chr11:83390800-83395600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:83391000-83392200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:83391000-83392800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:83391000-83393000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:83391000-83393000	Active TSS	Fetal Brain Male	brain

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