Variant report

Variant	rs604787
Chromosome Location	chr11:83376594-83376595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83371070..83373099-chr11:83374916..83376887,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11233708	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11233709	0.84[ASN][1000 genomes]
rs11233714	0.80[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs12098926	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12223386	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12226177	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12275254	0.88[MEX][hapmap]
rs1868892	0.96[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2443455	0.93[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.88[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs587103	0.87[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs604276	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs616414	0.82[MEX][hapmap]
rs617859	0.83[ASN][1000 genomes]
rs633338	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs641737	0.89[ASN][1000 genomes]
rs645596	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs650206	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6592137	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592138	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs668025	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs688414	0.86[ASN][1000 genomes]
rs7105588	0.82[MEX][hapmap]
rs7106608	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7109939	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7125165	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7131460	0.88[MEX][hapmap]
rs7927393	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7928379	1.00[ASW][hapmap];0.96[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7946175	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7952084	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs983589	0.82[MEX][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83373400-83377400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr11:83373800-83377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:83374000-83377400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:83374000-83379200	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83374000-83386600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:83374000-83387000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:83374600-83378600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:83374600-83387200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:83374800-83377200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:83374800-83379200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:83374800-83392000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:83375400-83378400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:83375600-83378400	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:83375600-83379200	Weak transcription	Brain Substantia Nigra	brain
15	chr11:83375600-83384400	Weak transcription	Fetal Heart	heart
16	chr11:83376000-83379200	Weak transcription	Fetal Brain Male	brain
17	chr11:83376400-83377400	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links