Variant report

Variant	rs616414
Chromosome Location	chr11:83350022-83350023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11233703	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233704	0.96[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233705	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233708	0.86[MEX][hapmap]
rs12273560	0.82[JPT][hapmap]
rs12273967	1.00[ASW][hapmap];0.82[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12275022	0.82[JPT][hapmap]
rs12275254	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.93[MEX][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12282021	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs1367980	0.82[JPT][hapmap]
rs17467404	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17545474	0.82[JPT][hapmap]
rs2060147	0.82[JPT][hapmap]
rs2374447	0.82[JPT][hapmap]
rs2443455	0.82[MEX][hapmap]
rs4143852	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4480567	0.82[JPT][hapmap]
rs536489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs604787	0.82[MEX][hapmap]
rs609948	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs617335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs650206	0.93[MEX][hapmap];0.83[TSI][hapmap]
rs66758862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67079375	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105588	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7125165	0.86[MEX][hapmap];0.83[TSI][hapmap]
rs7131460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7928379	0.93[MEX][hapmap]
rs7952084	0.93[MEX][hapmap]
rs9734327	0.82[JPT][hapmap]
rs983589	1.00[ASW][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs983590	0.82[JPT][hapmap]
rs984760	0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83341000-83357200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83341400-83353200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83341800-83352600	Weak transcription	Left Ventricle	heart
4	chr11:83347000-83351000	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83347400-83351200	Weak transcription	Fetal Brain Female	brain
6	chr11:83348000-83352600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:83348000-83352600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:83348800-83351400	Weak transcription	Fetal Brain Male	brain
9	chr11:83349600-83350200	ZNF genes & repeats	Hela-S3	cervix
10	chr11:83349800-83352800	Weak transcription	Right Atrium	heart

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