Variant report

Variant	rs12275022
Chromosome Location	chr11:83352600-83352601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:83352490-83352967	Hela-S3	cervix:	n/a	n/a
2	WRNIP1	chr11:83352592-83352791	GM12878	blood:	n/a	n/a
3	TCF7L2	chr11:83352493-83353142	Hela-S3	cervix:	n/a	n/a
4	TBP	chr11:83352424-83353190	Hela-S3	cervix:	n/a	chr11:83352649-83352660
5	STAT3	chr11:83352307-83352863	Hela-S3	cervix:	n/a	n/a
6	RAD21	chr11:83352518-83353007	Hela-S3	cervix:	n/a	n/a
7	ZKSCAN1	chr11:83352527-83352909	Hela-S3	cervix:	n/a	n/a
8	GTF2F1	chr11:83352489-83352915	Hela-S3	cervix:	n/a	chr11:83352649-83352660
9	EP300	chr11:83352394-83353035	Hela-S3	cervix:	n/a	chr11:83352486-83352500
10	FOS	chr11:83352560-83352922	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr11:83352454-83352967	SK-N-MC	brain:	n/a	n/a
12	YY1	chr11:83352439-83352836	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr11:83352380-83353071	Hela-S3	cervix:	n/a	n/a
14	CHD2	chr11:83352501-83352956	Hela-S3	cervix:	n/a	n/a
15	BRCA1	chr11:83352267-83352916	Hela-S3	cervix:	n/a	n/a
16	USF2	chr11:83352521-83352909	Hela-S3	cervix:	n/a	n/a
17	RFX5	chr11:83352261-83352994	Hela-S3	cervix:	n/a	n/a
18	CEBPB	chr11:83352348-83353058	Hela-S3	cervix:	n/a	chr11:83352485-83352498
19	POLR2A	chr11:83352558-83352799	Hela-S3	cervix:	n/a	n/a
20	MAX	chr11:83352495-83352982	Hela-S3	cervix:	n/a	n/a
21	RCOR1	chr11:83352466-83352962	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr11:83352577-83352802	Hela-S3	cervix:	n/a	n/a
23	MAZ	chr11:83352506-83352982	Hela-S3	cervix:	n/a	n/a
24	YY1	chr11:83352522-83352747	H1-hESC	embryonic stem cell:	n/a	n/a
25	SMC3	chr11:83352526-83352979	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000255311	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11233696	0.81[CEU][hapmap]
rs11233698	0.81[CEU][hapmap]
rs11233703	0.82[JPT][hapmap]
rs11233704	0.88[YRI][hapmap]
rs11233705	0.82[JPT][hapmap]
rs11233711	0.84[CEU][hapmap]
rs11233726	0.81[CEU][hapmap]
rs11233730	0.81[CEU][hapmap]
rs11605382	0.81[CEU][hapmap]
rs12223210	0.81[CEU][hapmap]
rs12225687	0.81[CEU][hapmap]
rs12273560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12273967	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12275254	0.82[JPT][hapmap]
rs12276903	0.81[CEU][hapmap]
rs12280583	0.81[CEU][hapmap]
rs12282021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12282317	0.81[CEU][hapmap]
rs12291033	0.81[CEU][hapmap]
rs12291743	0.81[CEU][hapmap]
rs12293731	0.81[CEU][hapmap]
rs1367980	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1432048	0.81[CEU][hapmap]
rs17545474	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2060147	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2116477	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2374447	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143852	0.82[JPT][hapmap]
rs4480567	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs536489	0.82[JPT][hapmap]
rs58847848	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs609948	0.82[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs616414	0.82[JPT][hapmap]
rs617335	0.82[JPT][hapmap]
rs7101642	0.81[CEU][hapmap]
rs7105588	0.82[JPT][hapmap];0.85[YRI][hapmap]
rs7131460	0.82[JPT][hapmap]
rs725192	0.81[CEU][hapmap]
rs7933908	0.81[CEU][hapmap]
rs7949429	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs919663	0.81[CEU][hapmap]
rs9734327	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs983589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs983590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs984759	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs984760	0.89[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83341000-83357200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83341400-83353200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83341800-83352600	Weak transcription	Left Ventricle	heart
4	chr11:83348000-83352600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83348000-83352600	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:83349800-83352800	Weak transcription	Right Atrium	heart
7	chr11:83350400-83352600	Weak transcription	Psoas Muscle	Psoas
8	chr11:83351000-83353400	Enhancers	Fetal Heart	heart
9	chr11:83351200-83352600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:83351200-83355200	Enhancers	Hela-S3	cervix
11	chr11:83351400-83352600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:83351400-83352600	Weak transcription	Brain Angular Gyrus	brain
13	chr11:83351400-83353000	Enhancers	Fetal Brain Male	brain
14	chr11:83351600-83352600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:83351800-83353000	Weak transcription	Fetal Brain Female	brain
16	chr11:83351800-83353000	Weak transcription	NHDF-Ad	bronchial
17	chr11:83352000-83357200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:83352400-83352800	Enhancers	Fetal Muscle Leg	muscle
19	chr11:83352600-83352800	Enhancers	Psoas Muscle	Psoas
20	chr11:83352600-83353000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:83352600-83353000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:83352600-83353000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:83352600-83353000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:83352600-83353000	Enhancers	Brain Cingulate Gyrus	brain
25	chr11:83352600-83353000	Enhancers	Left Ventricle	heart
26	chr11:83352600-83353200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:83352600-83353200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:83352600-83353200	Enhancers	Brain Angular Gyrus	brain
29	chr11:83352600-83353400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:83352600-83353400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:83352600-83353400	Enhancers	Brain Hippocampus Middle	brain

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