Variant report

Variant	rs11233696
Chromosome Location	chr11:83324463-83324464
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83320562..83322405-chr11:83324289..83326675,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10501543	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10501544	1.00[CEU][hapmap];0.88[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898147	0.90[CEU][hapmap]
rs11233659	0.85[CEU][hapmap]
rs11233674	0.85[AFR][1000 genomes]
rs11233697	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233698	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12271855	0.84[CEU][hapmap]
rs12273560	0.81[CEU][hapmap]
rs12273919	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes]
rs12275022	0.81[CEU][hapmap]
rs12276903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280583	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282021	0.81[CEU][hapmap]
rs12282317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290090	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12291033	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12291733	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12291743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294560	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1367980	0.80[EUR][1000 genomes]
rs1367983	0.84[CEU][hapmap]
rs1367986	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1432047	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432048	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1541891	0.85[CEU][hapmap]
rs17145339	0.84[CEU][hapmap]
rs17145376	0.84[CEU][hapmap]
rs17522327	0.84[CEU][hapmap]
rs17545474	0.80[EUR][1000 genomes]
rs2374447	0.81[CEU][hapmap]
rs35734934	0.80[AFR][1000 genomes]
rs4100074	0.84[AFR][1000 genomes]
rs57980890	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58543836	0.84[AFR][1000 genomes]
rs58847848	0.81[EUR][1000 genomes]
rs60809470	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61519522	0.84[AFR][1000 genomes]
rs66819432	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7103498	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs725192	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs919663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs919664	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9734327	0.81[CEU][hapmap];0.80[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83322200-83325200	Enhancers	Brain Cingulate Gyrus	brain
2	chr11:83322200-83325200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr11:83322600-83324600	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83322600-83325000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:83322600-83325000	Enhancers	Brain Substantia Nigra	brain
6	chr11:83322600-83326000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:83322800-83325200	Enhancers	Brain Angular Gyrus	brain
8	chr11:83323600-83324600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:83323800-83324600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:83323800-83325200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:83323800-83328200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:83324200-83341200	Weak transcription	Brain Anterior Caudate	brain
13	chr11:83324400-83324800	Enhancers	GM12878-XiMat	blood
14	chr11:83324400-83340400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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