Variant report

Variant	rs17145376
Chromosome Location	chr11:83251692-83251693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83245755..83248729-chr11:83250571..83253175,2	MCF-7	breast:
2	chr11:82996768..82998451-chr11:83250525..83253296,2	K562	blood:

Variant related genes	Relation type
ENSG00000255234	Chromatin interaction
ENSG00000137500	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10501541	0.89[CEU][hapmap];0.84[CHD][hapmap];0.86[ASN][1000 genomes]
rs10501544	0.84[CEU][hapmap]
rs11233631	0.84[ASN][1000 genomes]
rs11233634	0.89[CEU][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs11233637	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs11233639	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs11233640	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs11233659	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233696	0.84[CEU][hapmap]
rs11233697	0.84[CEU][hapmap]
rs11233698	0.84[CEU][hapmap]
rs11601201	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271855	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12273919	0.84[CEU][hapmap]
rs12275432	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12276903	0.84[CEU][hapmap]
rs12278831	0.84[CEU][hapmap]
rs12279615	0.86[ASN][1000 genomes]
rs12280583	0.84[CEU][hapmap]
rs12282317	0.84[CEU][hapmap]
rs12287099	0.86[ASN][1000 genomes]
rs12287103	0.86[ASN][1000 genomes]
rs12287201	0.86[ASN][1000 genomes]
rs12288797	0.89[CEU][hapmap];0.84[CHD][hapmap];0.86[ASN][1000 genomes]
rs12290090	0.84[CEU][hapmap]
rs12291033	0.84[CEU][hapmap]
rs12291733	0.83[CEU][hapmap]
rs12291743	0.84[CEU][hapmap]
rs12293731	0.84[CEU][hapmap]
rs12294748	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12295733	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs1367983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367986	0.84[CEU][hapmap]
rs1432048	0.84[CEU][hapmap]
rs1432050	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs1541891	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145339	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17461216	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs17522327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835762	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043208	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs35393309	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4584604	0.86[ASN][1000 genomes]
rs57437963	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59824513	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60846553	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61568057	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67025044	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68058076	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103498	0.84[CEU][hapmap]
rs7123816	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs725192	0.84[CEU][hapmap]
rs72946636	0.86[ASN][1000 genomes]
rs7927929	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs919663	0.84[CEU][hapmap]
rs9787866	0.83[CEU][hapmap];0.84[ASN][1000 genomes]
rs9804591	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17145376	CREBZF	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83245200-83255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83250000-83253600	Weak transcription	Psoas Muscle	Psoas
3	chr11:83250800-83252400	Enhancers	Hela-S3	cervix
4	chr11:83251000-83252000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:83251000-83252000	Enhancers	Fetal Stomach	stomach
6	chr11:83251000-83252600	Enhancers	Fetal Lung	lung
7	chr11:83251000-83257600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:83251000-83257600	Enhancers	Brain Anterior Caudate	brain
9	chr11:83251000-83258200	Enhancers	Brain Hippocampus Middle	brain
10	chr11:83251200-83251800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:83251200-83252800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:83251200-83257400	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:83251200-83258200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr11:83251400-83251800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:83251400-83251800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:83251400-83251800	Enhancers	Fetal Muscle Leg	muscle
17	chr11:83251400-83251800	Enhancers	Stomach Smooth Muscle	stomach
18	chr11:83251400-83255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:83251400-83255600	Enhancers	Fetal Brain Male	brain
20	chr11:83251400-83257600	Enhancers	Brain Angular Gyrus	brain
21	chr11:83251600-83251800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:83251600-83252000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:83251600-83253600	Weak transcription	Fetal Brain Female	brain
24	chr11:83251600-83255400	Weak transcription	Small Intestine	intestine
25	chr11:83251600-83258200	Enhancers	Brain Substantia Nigra	brain

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