Variant report

Variant	rs12294748
Chromosome Location	chr11:83242985-83242986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10501541	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11233631	0.86[ASN][1000 genomes]
rs11233634	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11233637	0.80[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11233639	0.80[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11233640	0.80[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11233659	0.90[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11601201	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12271855	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275432	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12279615	0.88[ASN][1000 genomes]
rs12287099	0.88[ASN][1000 genomes]
rs12287103	0.88[ASN][1000 genomes]
rs12287201	0.88[ASN][1000 genomes]
rs12288797	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12295733	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1367983	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432050	0.80[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1541891	0.90[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17145339	0.89[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17145376	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17461216	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17522327	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1835762	0.80[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2043208	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs35393309	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4584604	0.88[ASN][1000 genomes]
rs57437963	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59824513	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60846553	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61568057	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67025044	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68058076	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123816	0.80[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs72946636	0.88[ASN][1000 genomes]
rs7927929	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787813	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9787866	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9804591	0.88[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83233400-83250800	Weak transcription	Hela-S3	cervix
2	chr11:83235000-83244200	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83235200-83251000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:83235200-83251200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83235200-83251200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83235200-83251400	Weak transcription	Brain Angular Gyrus	brain
7	chr11:83235800-83244400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:83239800-83243600	Weak transcription	Fetal Lung	lung
9	chr11:83240400-83244400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:83240400-83247200	Weak transcription	Liver	Liver
11	chr11:83242200-83243000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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