Variant report

Variant	rs61568057
Chromosome Location	chr11:83248783-83248784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10501541	0.88[ASN][1000 genomes]
rs11233631	0.86[ASN][1000 genomes]
rs11233634	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11233637	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11233639	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11233640	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11233659	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11601201	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12271855	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275432	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12279615	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12287099	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12287103	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12287201	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12288797	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12294748	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295733	0.86[ASN][1000 genomes]
rs1367983	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432050	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1541891	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17145339	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17145376	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17461216	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17522327	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1835762	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2043208	0.83[ASN][1000 genomes]
rs35393309	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4584604	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57437963	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59824513	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60846553	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67025044	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68058076	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123816	0.86[ASN][1000 genomes]
rs72946636	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7927929	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787813	0.81[ASN][1000 genomes]
rs9787866	0.86[ASN][1000 genomes]
rs9804591	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61568057	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83233400-83250800	Weak transcription	Hela-S3	cervix
2	chr11:83235200-83251000	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83235200-83251200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83235200-83251200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83235200-83251400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83243000-83251200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:83245200-83255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:83245400-83251600	Weak transcription	Brain Substantia Nigra	brain
9	chr11:83245600-83249400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:83245800-83251000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:83246000-83250800	Weak transcription	Fetal Brain Female	brain
12	chr11:83246000-83251000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:83246000-83251400	Weak transcription	Fetal Brain Male	brain
14	chr11:83246600-83249800	Weak transcription	Aorta	Aorta
15	chr11:83247600-83249400	Weak transcription	Psoas Muscle	Psoas

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