Variant report

Variant	rs2043208
Chromosome Location	chr11:83184839-83184840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83162357..83164289-chr11:83184608..83187226,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10501541	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233631	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233634	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233637	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233639	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233640	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233659	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs11601201	0.81[ASN][1000 genomes]
rs12271855	0.84[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12279615	0.95[ASN][1000 genomes]
rs12287099	0.95[ASN][1000 genomes]
rs12287103	0.95[ASN][1000 genomes]
rs12287201	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12288797	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.95[ASN][1000 genomes]
rs12294748	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12295733	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1367983	0.84[CEU][hapmap];0.89[GIH][hapmap];0.81[ASN][1000 genomes]
rs1432050	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1541891	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17145339	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17145376	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs17461216	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17522327	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs1835762	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs35393309	0.81[ASN][1000 genomes]
rs4584604	0.95[ASN][1000 genomes]
rs57437963	0.83[ASN][1000 genomes]
rs61568057	0.83[ASN][1000 genomes]
rs67025044	0.81[ASN][1000 genomes]
rs68058076	0.81[ASN][1000 genomes]
rs7123816	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72946636	0.95[ASN][1000 genomes]
rs7927929	0.82[ASN][1000 genomes]
rs9787813	0.89[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9787866	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9804591	0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2043208	ME3	cis	cerebellum	SCAN
rs2043208	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83170600-83186800	Weak transcription	Brain Substantia Nigra	brain
2	chr11:83182200-83185000	Enhancers	Fetal Lung	lung
3	chr11:83183400-83185200	Enhancers	Fetal Intestine Small	intestine
4	chr11:83183600-83186000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:83183600-83192000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83183800-83187000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83183800-83191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:83183800-83191200	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:83184000-83187000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:83184000-83187000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:83184200-83187000	Weak transcription	Brain Angular Gyrus	brain
12	chr11:83184400-83185600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:83184800-83185400	Enhancers	Hela-S3	cervix

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