Variant report

Variant	rs9787866
Chromosome Location	chr11:83187965-83187966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10501541	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233631	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233634	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233637	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233639	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233640	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233659	0.85[CEU][hapmap];0.84[ASN][1000 genomes]
rs11601201	0.84[ASN][1000 genomes]
rs12271855	0.83[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12279615	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12287099	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287103	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287201	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288797	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12294748	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12295733	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367983	0.83[CEU][hapmap];0.84[ASN][1000 genomes]
rs1432050	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541891	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17145339	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17145376	0.83[CEU][hapmap];0.84[ASN][1000 genomes]
rs17461216	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17522327	0.83[CEU][hapmap];0.84[ASN][1000 genomes]
rs1835762	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2043208	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35393309	0.84[ASN][1000 genomes]
rs4584604	0.98[ASN][1000 genomes]
rs57437963	0.86[ASN][1000 genomes]
rs61568057	0.86[ASN][1000 genomes]
rs67025044	0.84[ASN][1000 genomes]
rs68058076	0.84[ASN][1000 genomes]
rs7123816	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946636	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927929	0.84[ASN][1000 genomes]
rs9787813	0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9804591	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9787866	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83183600-83192000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83183800-83191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83183800-83191200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83187200-83196600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83187400-83191200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:83187400-83191200	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83187400-83191400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:83187400-83191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:83187400-83191400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:83187600-83189200	Weak transcription	Fetal Lung	lung
11	chr11:83187600-83191400	Weak transcription	Brain Angular Gyrus	brain
12	chr11:83187600-83191600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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