Variant report

Variant	rs12288797
Chromosome Location	chr11:83229713-83229714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10501541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11233631	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233659	0.89[CEU][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11601201	0.86[ASN][1000 genomes]
rs12271855	0.89[CEU][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12273919	0.84[CEU][hapmap]
rs12275432	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12279615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287099	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287103	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290090	0.84[CEU][hapmap]
rs12291733	0.83[CEU][hapmap]
rs12294748	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12295733	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1367983	0.91[ASW][hapmap];0.89[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1367986	0.84[CEU][hapmap]
rs1432050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1541891	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145339	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145376	0.89[CEU][hapmap];0.84[CHD][hapmap];0.86[ASN][1000 genomes]
rs17461216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17522327	1.00[ASW][hapmap];0.89[CEU][hapmap];0.83[CHD][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1835762	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2043208	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.95[ASN][1000 genomes]
rs35393309	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4584604	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57437963	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59824513	0.82[ASN][1000 genomes]
rs60846553	0.82[ASN][1000 genomes]
rs61568057	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67025044	0.86[ASN][1000 genomes]
rs68058076	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7103498	0.84[CEU][hapmap]
rs7123816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72946636	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946642	0.81[EUR][1000 genomes]
rs7927929	0.87[ASN][1000 genomes]
rs9787813	0.82[CEU][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9787866	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9804591	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12288797	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83222200-83231800	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83223400-83231600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83229200-83230400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:83229400-83229800	ZNF genes & repeats	Pancreas	Pancrea

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