Variant report

Variant	rs12291733
Chromosome Location	chr11:83266179-83266180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83263951..83266182-chr11:83267863..83270814,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501541	0.83[CEU][hapmap]
rs10501544	0.89[CEU][hapmap]
rs11233634	0.83[CEU][hapmap]
rs11233637	0.85[CEU][hapmap]
rs11233639	0.85[CEU][hapmap]
rs11233640	0.85[CEU][hapmap]
rs11233659	0.85[CEU][hapmap]
rs11233669	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233674	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233696	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11233697	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs11233698	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12271855	0.83[CEU][hapmap]
rs12273919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12276903	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12278831	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs12280583	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12282317	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12288797	0.83[CEU][hapmap]
rs12290090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291033	0.89[CEU][hapmap]
rs12291743	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12293731	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12295733	0.83[CEU][hapmap]
rs1367983	0.83[CEU][hapmap]
rs1367986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432048	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1432050	0.85[CEU][hapmap]
rs1541891	0.85[CEU][hapmap]
rs17145339	0.83[CEU][hapmap]
rs17145376	0.83[CEU][hapmap]
rs17461216	0.83[CEU][hapmap]
rs17522327	0.83[CEU][hapmap]
rs35734934	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4100074	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55765915	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58543836	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61519522	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7103498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7123816	0.84[CEU][hapmap]
rs725192	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs919663	0.90[CEU][hapmap];1.00[CHB][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83261800-83277200	Weak transcription	Hela-S3	cervix
2	chr11:83262200-83266200	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83265600-83267000	Enhancers	Fetal Stomach	stomach
4	chr11:83265600-83267200	Enhancers	Fetal Muscle Leg	muscle
5	chr11:83265800-83266400	Enhancers	Fetal Lung	lung
6	chr11:83265800-83266600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:83265800-83266600	Enhancers	Brain Angular Gyrus	brain
8	chr11:83265800-83266600	Enhancers	Colon Smooth Muscle	Colon
9	chr11:83265800-83266600	Enhancers	Fetal Heart	heart
10	chr11:83265800-83266600	Enhancers	NHDF-Ad	bronchial
11	chr11:83265800-83267200	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:83266000-83266400	Enhancers	Brain Anterior Caudate	brain
13	chr11:83266000-83266600	Enhancers	Brain Hippocampus Middle	brain
14	chr11:83266000-83266600	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links