Variant report

Variant	rs12290090
Chromosome Location	chr11:83265636-83265637
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83255700..83257941-chr11:83263394..83265882,2	K562	blood:
2	chr11:83263951..83266182-chr11:83267863..83270814,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10501541	0.84[CEU][hapmap]
rs10501544	0.89[CEU][hapmap]
rs10898147	0.80[CEU][hapmap]
rs11233634	0.84[CEU][hapmap]
rs11233637	0.85[CEU][hapmap]
rs11233639	0.85[CEU][hapmap]
rs11233640	0.85[CEU][hapmap]
rs11233659	0.85[CEU][hapmap]
rs11233669	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233674	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233696	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11233697	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs11233698	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12271855	0.84[CEU][hapmap]
rs12273919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12276903	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12278831	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs12280583	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12282317	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12288797	0.84[CEU][hapmap]
rs12291033	0.90[CEU][hapmap]
rs12291733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291743	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12293731	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs12295077	0.84[AFR][1000 genomes]
rs12295733	0.84[CEU][hapmap]
rs1367983	0.84[CEU][hapmap]
rs1367986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432048	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1432050	0.85[CEU][hapmap]
rs1541891	0.85[CEU][hapmap]
rs17145339	0.84[CEU][hapmap]
rs17145376	0.84[CEU][hapmap]
rs17461216	0.84[CEU][hapmap]
rs17522327	0.84[CEU][hapmap]
rs35734934	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4100074	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55765915	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58543836	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61519522	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7103498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7123816	0.85[CEU][hapmap]
rs725192	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs919663	0.90[CEU][hapmap];1.00[CHB][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83261600-83266000	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83261800-83265800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:83261800-83277200	Weak transcription	Hela-S3	cervix
4	chr11:83262200-83266200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83262600-83265800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83262600-83265800	Weak transcription	Fetal Heart	heart
7	chr11:83262800-83265800	Weak transcription	Brain Angular Gyrus	brain
8	chr11:83262800-83265800	Weak transcription	Fetal Lung	lung
9	chr11:83263600-83266000	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:83263600-83266000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:83265600-83267000	Enhancers	Fetal Stomach	stomach
12	chr11:83265600-83267200	Enhancers	Fetal Muscle Leg	muscle

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