Variant report

Variant	rs11233659
Chromosome Location	chr11:83245514-83245515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10501541	0.89[CEU][hapmap];0.86[ASN][1000 genomes]
rs10501544	0.84[CEU][hapmap]
rs11233631	0.84[ASN][1000 genomes]
rs11233634	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs11233637	0.90[CEU][hapmap];0.84[ASN][1000 genomes]
rs11233639	0.90[CEU][hapmap];0.84[ASN][1000 genomes]
rs11233640	0.90[CEU][hapmap];0.84[ASN][1000 genomes]
rs11233696	0.85[CEU][hapmap]
rs11233697	0.84[CEU][hapmap]
rs11233698	0.85[CEU][hapmap]
rs11601201	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12271855	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12273919	0.84[CEU][hapmap]
rs12275432	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12276903	0.85[CEU][hapmap]
rs12278831	0.84[CEU][hapmap]
rs12279615	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12280583	0.85[CEU][hapmap]
rs12282317	0.85[CEU][hapmap]
rs12287099	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12287103	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12287201	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12288797	0.89[CEU][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12290090	0.85[CEU][hapmap]
rs12291033	0.85[CEU][hapmap]
rs12291733	0.85[CEU][hapmap]
rs12291743	0.85[CEU][hapmap]
rs12293731	0.85[CEU][hapmap]
rs12294748	0.90[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12295733	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs1367983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1367986	0.85[CEU][hapmap]
rs1432048	0.85[CEU][hapmap]
rs1432050	0.90[CEU][hapmap];0.84[ASN][1000 genomes]
rs1541891	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145339	1.00[CEU][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17461216	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs17522327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835762	0.90[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043208	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs35393309	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4584604	0.86[ASN][1000 genomes]
rs57437963	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59824513	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60846553	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61568057	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67025044	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68058076	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7103498	0.84[CEU][hapmap]
rs7123816	0.90[CEU][hapmap];0.84[ASN][1000 genomes]
rs725192	0.85[CEU][hapmap]
rs72946636	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7927929	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs919663	0.85[CEU][hapmap]
rs9787866	0.85[CEU][hapmap];0.84[ASN][1000 genomes]
rs9804591	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11233659	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83233400-83250800	Weak transcription	Hela-S3	cervix
2	chr11:83235200-83251000	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83235200-83251200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83235200-83251200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83235200-83251400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83240400-83247200	Weak transcription	Liver	Liver
7	chr11:83243000-83251200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:83244200-83245600	Enhancers	Brain Hippocampus Middle	brain
9	chr11:83244400-83245800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:83244400-83246200	Enhancers	Fetal Intestine Large	intestine
11	chr11:83244600-83246000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:83244600-83246000	Enhancers	Fetal Brain Male	brain
13	chr11:83245200-83245600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:83245200-83245600	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr11:83245200-83245800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:83245200-83246000	Enhancers	Fetal Brain Female	brain
17	chr11:83245200-83255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:83245400-83251600	Weak transcription	Brain Substantia Nigra	brain

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