Variant report

Variant	rs11233631
Chromosome Location	chr11:83190419-83190420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10501541	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233634	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233637	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233639	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233640	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233659	0.84[ASN][1000 genomes]
rs11601201	0.84[ASN][1000 genomes]
rs12271855	0.86[ASN][1000 genomes]
rs12279615	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287099	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287103	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287201	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288797	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12294748	0.86[ASN][1000 genomes]
rs12295733	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367983	0.84[ASN][1000 genomes]
rs1432050	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541891	0.88[ASN][1000 genomes]
rs17145339	0.88[ASN][1000 genomes]
rs17145376	0.84[ASN][1000 genomes]
rs17461216	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17522327	0.84[ASN][1000 genomes]
rs1835762	0.88[ASN][1000 genomes]
rs2043208	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35393309	0.84[ASN][1000 genomes]
rs4584604	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57437963	0.86[ASN][1000 genomes]
rs61568057	0.86[ASN][1000 genomes]
rs67025044	0.84[ASN][1000 genomes]
rs68058076	0.84[ASN][1000 genomes]
rs7123816	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946636	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927929	0.84[ASN][1000 genomes]
rs9787813	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9787866	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804591	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2249153	chr11:83190418-83190419	Weak transcription	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11233631	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83183600-83192000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83183800-83191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83183800-83191200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83187200-83196600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83187400-83191200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:83187400-83191200	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83187400-83191400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:83187400-83191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:83187400-83191400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:83187600-83191400	Weak transcription	Brain Angular Gyrus	brain
11	chr11:83187600-83191600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:83188800-83192600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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