Variant report

Variant	rs9787813
Chromosome Location	chr11:83184256-83184257
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10501541	0.82[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233631	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233634	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233637	0.84[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233639	0.84[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233640	0.84[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12271855	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12279615	0.93[ASN][1000 genomes]
rs12287099	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12287103	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12287201	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12288797	0.82[CEU][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12294748	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12295733	0.82[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432050	0.83[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1541891	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17145339	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17461216	0.82[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835762	0.84[ASN][1000 genomes]
rs2043208	0.89[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4584604	0.93[ASN][1000 genomes]
rs57437963	0.81[ASN][1000 genomes]
rs61568057	0.81[ASN][1000 genomes]
rs7123816	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72946636	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787866	0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9804591	0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9787813	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83170600-83186800	Weak transcription	Brain Substantia Nigra	brain
2	chr11:83182200-83185000	Enhancers	Fetal Lung	lung
3	chr11:83183400-83184600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:83183400-83185200	Enhancers	Fetal Intestine Small	intestine
5	chr11:83183600-83184400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:83183600-83184800	Weak transcription	Fetal Intestine Large	intestine
7	chr11:83183600-83186000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:83183600-83192000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:83183800-83187000	Weak transcription	Brain Anterior Caudate	brain
10	chr11:83183800-83191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:83183800-83191200	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:83184000-83184400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:83184000-83187000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:83184000-83187000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:83184200-83184800	Weak transcription	Hela-S3	cervix
16	chr11:83184200-83187000	Weak transcription	Brain Angular Gyrus	brain

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