Variant report

Variant	rs12287103
Chromosome Location	chr11:83219938-83219939
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10501541	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11233631	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233634	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233637	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233639	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233640	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233659	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11601201	0.86[ASN][1000 genomes]
rs12271855	0.88[ASN][1000 genomes]
rs12275432	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12279615	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287099	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288797	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294748	0.88[ASN][1000 genomes]
rs12295733	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1367983	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1432050	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1541891	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145339	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145376	0.86[ASN][1000 genomes]
rs17461216	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17522327	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1835762	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2043208	0.95[ASN][1000 genomes]
rs35393309	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4584604	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57437963	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59824513	0.82[ASN][1000 genomes]
rs60846553	0.82[ASN][1000 genomes]
rs61568057	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67025044	0.86[ASN][1000 genomes]
rs68058076	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7123816	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72946636	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927929	0.87[ASN][1000 genomes]
rs9787813	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787866	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9804591	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12287103	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83211400-83220000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83211600-83222200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83218000-83221600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:83219000-83220400	Enhancers	Brain Substantia Nigra	brain
5	chr11:83219400-83222600	Enhancers	Fetal Intestine Large	intestine
6	chr11:83219600-83220000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:83219600-83220400	Enhancers	Liver	Liver
8	chr11:83219600-83220600	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:83219600-83220800	Enhancers	Fetal Intestine Small	intestine
10	chr11:83219600-83221000	Enhancers	HepG2	liver
11	chr11:83219800-83220200	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:83219800-83220200	Enhancers	Brain Hippocampus Middle	brain
13	chr11:83219800-83220400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:83219800-83220600	Enhancers	Brain Anterior Caudate	brain

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