Variant report

Variant	rs60846553
Chromosome Location	chr11:83256749-83256750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83255700..83257941-chr11:83263394..83265882,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10501541	0.82[ASN][1000 genomes]
rs11233659	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11601201	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12271855	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12275432	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279615	0.82[ASN][1000 genomes]
rs12287099	0.82[ASN][1000 genomes]
rs12287103	0.82[ASN][1000 genomes]
rs12287201	0.82[ASN][1000 genomes]
rs12288797	0.82[ASN][1000 genomes]
rs12294748	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1367983	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1541891	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145339	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145376	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17522327	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835762	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35393309	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4584604	0.82[ASN][1000 genomes]
rs57437963	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59824513	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61568057	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67025044	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68058076	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72946636	0.82[ASN][1000 genomes]
rs7927929	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9804591	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs60846553	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83251000-83257600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr11:83251000-83257600	Enhancers	Brain Anterior Caudate	brain
3	chr11:83251000-83258200	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83251200-83257400	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:83251200-83258200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:83251400-83257600	Enhancers	Brain Angular Gyrus	brain
7	chr11:83251600-83258200	Enhancers	Brain Substantia Nigra	brain
8	chr11:83252800-83258200	Enhancers	Fetal Intestine Large	intestine
9	chr11:83253600-83258000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:83254000-83257000	Enhancers	Fetal Muscle Leg	muscle
11	chr11:83254400-83257200	Enhancers	Fetal Stomach	stomach
12	chr11:83254800-83256800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:83255600-83256800	Weak transcription	Fetal Brain Male	brain
14	chr11:83255600-83261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:83256000-83261400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:83256200-83259200	Weak transcription	Hela-S3	cervix
17	chr11:83256200-83261400	Weak transcription	NHEK	skin
18	chr11:83256400-83257200	Enhancers	Fetal Brain Female	brain
19	chr11:83256400-83257600	Enhancers	Brain Germinal Matrix	brain
20	chr11:83256600-83257000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr11:83256600-83257400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:83256600-83257400	Enhancers	Fetal Lung	lung
23	chr11:83256600-83257600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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