Variant report

Variant	rs7927929
Chromosome Location	chr11:83235409-83235410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10501541	0.87[ASN][1000 genomes]
rs11233631	0.84[ASN][1000 genomes]
rs11233634	0.84[ASN][1000 genomes]
rs11233637	0.84[ASN][1000 genomes]
rs11233639	0.84[ASN][1000 genomes]
rs11233640	0.84[ASN][1000 genomes]
rs11233659	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11601201	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12271855	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12275432	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12279615	0.87[ASN][1000 genomes]
rs12287099	0.87[ASN][1000 genomes]
rs12287103	0.87[ASN][1000 genomes]
rs12287201	0.87[ASN][1000 genomes]
rs12288797	0.87[ASN][1000 genomes]
rs12294748	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12295733	0.84[ASN][1000 genomes]
rs1367983	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1432050	0.84[ASN][1000 genomes]
rs1541891	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145339	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145376	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17461216	0.84[ASN][1000 genomes]
rs17522327	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1835762	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2043208	0.82[ASN][1000 genomes]
rs35393309	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4584604	0.87[ASN][1000 genomes]
rs57437963	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59824513	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60846553	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61568057	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67025044	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68058076	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7123816	0.84[ASN][1000 genomes]
rs72946636	0.87[ASN][1000 genomes]
rs9787866	0.84[ASN][1000 genomes]
rs9804591	0.87[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83229800-83236600	Weak transcription	Pancreas	Pancrea
2	chr11:83233400-83235600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83233400-83236400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:83233400-83236600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:83233400-83250800	Weak transcription	Hela-S3	cervix
6	chr11:83234600-83235800	Enhancers	Brain Substantia Nigra	brain
7	chr11:83234800-83235800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:83234800-83235800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:83235000-83235600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:83235000-83239000	Weak transcription	Psoas Muscle	Psoas
11	chr11:83235000-83244200	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:83235200-83238400	Weak transcription	Liver	Liver
13	chr11:83235200-83251000	Weak transcription	Brain Anterior Caudate	brain
14	chr11:83235200-83251200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:83235200-83251200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:83235200-83251400	Weak transcription	Brain Angular Gyrus	brain

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