Variant report

Variant	rs68058076
Chromosome Location	chr11:83258522-83258523
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10501541	0.86[ASN][1000 genomes]
rs11233631	0.84[ASN][1000 genomes]
rs11233634	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11233637	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11233639	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11233640	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11233659	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11601201	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271855	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12275432	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12279615	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12287099	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12287103	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12287201	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12288797	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12294748	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12295733	0.84[ASN][1000 genomes]
rs1367983	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432050	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1541891	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145339	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145376	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17461216	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17522327	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835762	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043208	0.81[ASN][1000 genomes]
rs35393309	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4584604	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs57437963	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59824513	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60846553	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61568057	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67025044	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123816	0.84[ASN][1000 genomes]
rs72946636	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7927929	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9787866	0.84[ASN][1000 genomes]
rs9804591	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs68058076	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83255600-83261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:83256000-83261400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:83256200-83259200	Weak transcription	Hela-S3	cervix
4	chr11:83256200-83261400	Weak transcription	NHEK	skin
5	chr11:83257200-83265600	Weak transcription	Fetal Stomach	stomach
6	chr11:83257400-83260000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:83257400-83261600	Weak transcription	Fetal Lung	lung
8	chr11:83257600-83258600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:83257600-83261000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:83257600-83261200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:83257600-83261200	Weak transcription	Brain Germinal Matrix	brain
12	chr11:83258200-83259800	Weak transcription	Brain Anterior Caudate	brain
13	chr11:83258200-83260200	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:83258200-83261200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:83258200-83261800	Weak transcription	Brain Substantia Nigra	brain
16	chr11:83258400-83258600	Enhancers	Fetal Brain Male	brain

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