Variant report

Variant	rs17145339
Chromosome Location	chr11:83236236-83236237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10501541	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10501544	0.84[CEU][hapmap]
rs11233631	0.88[ASN][1000 genomes]
rs11233634	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11233637	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11233639	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11233640	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11233659	1.00[CEU][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233696	0.84[CEU][hapmap]
rs11233697	0.84[CEU][hapmap]
rs11233698	0.84[CEU][hapmap]
rs11601201	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12271855	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12273919	0.84[CEU][hapmap]
rs12275432	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12276903	0.84[CEU][hapmap]
rs12278831	0.84[CEU][hapmap]
rs12279615	0.91[ASN][1000 genomes]
rs12280583	0.84[CEU][hapmap]
rs12282317	0.84[CEU][hapmap]
rs12287099	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12287103	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12287201	0.91[ASN][1000 genomes]
rs12288797	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12290090	0.84[CEU][hapmap]
rs12291033	0.84[CEU][hapmap]
rs12291733	0.83[CEU][hapmap]
rs12291743	0.84[CEU][hapmap]
rs12293731	0.84[CEU][hapmap]
rs12294748	0.89[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12295733	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1367983	1.00[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1367986	0.84[CEU][hapmap]
rs1432048	0.84[CEU][hapmap]
rs1432050	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1541891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17145376	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17461216	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17522327	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835762	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2043208	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs35393309	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4584604	0.91[ASN][1000 genomes]
rs57437963	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59824513	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60846553	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61568057	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67025044	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68058076	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7103498	0.84[CEU][hapmap]
rs7123816	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs725192	0.84[CEU][hapmap]
rs72946636	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7927929	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs919663	0.84[CEU][hapmap]
rs9787813	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9787866	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9804591	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17145339	CREBZF	cis	cerebellum	SCAN
rs17145339	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83229800-83236600	Weak transcription	Pancreas	Pancrea
2	chr11:83233400-83236400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:83233400-83236600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:83233400-83250800	Weak transcription	Hela-S3	cervix
5	chr11:83235000-83239000	Weak transcription	Psoas Muscle	Psoas
6	chr11:83235000-83244200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:83235200-83238400	Weak transcription	Liver	Liver
8	chr11:83235200-83251000	Weak transcription	Brain Anterior Caudate	brain
9	chr11:83235200-83251200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:83235200-83251200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:83235200-83251400	Weak transcription	Brain Angular Gyrus	brain
12	chr11:83235800-83236600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:83235800-83244400	Weak transcription	Brain Substantia Nigra	brain

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