Variant report

Variant	rs1835762
Chromosome Location	chr11:83232751-83232752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:83232478..83233198-chr11:83435149..83435724,2	MCF-7	breast:
2	chr11:83232530..83233170-chr11:83527353..83527936,3	MCF-7	breast:
3	chr11:83232403..83232986-chr11:83527322..83527852,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10501541	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs11233631	0.88[ASN][1000 genomes]
rs11233634	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11233637	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11233639	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11233640	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11233659	0.90[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11601201	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12271855	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12275432	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12279615	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12280583	0.81[CEU][hapmap]
rs12287099	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12287103	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12287201	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12288797	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12294748	0.80[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12295733	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs1367983	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1432050	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1541891	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145339	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145376	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17461216	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17522327	0.89[CEU][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043208	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs35393309	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4584604	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57437963	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59824513	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60846553	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61568057	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67025044	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68058076	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7123816	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs72946636	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7927929	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9787813	0.84[ASN][1000 genomes]
rs9787866	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs9804591	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1835762	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83229800-83236600	Weak transcription	Pancreas	Pancrea
2	chr11:83231400-83233400	Enhancers	Brain Angular Gyrus	brain
3	chr11:83231600-83233000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:83231800-83233000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:83231800-83233000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:83231800-83233000	Enhancers	HepG2	liver
7	chr11:83231800-83233400	Enhancers	Brain Substantia Nigra	brain
8	chr11:83232000-83233000	Enhancers	Psoas Muscle	Psoas
9	chr11:83232000-83235000	Enhancers	Brain Hippocampus Middle	brain
10	chr11:83232200-83234800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:83232600-83233000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:83232600-83234000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:83232600-83234800	Weak transcription	Brain Inferior Temporal Lobe	brain

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