Variant report

Variant	rs59824513
Chromosome Location	chr11:83255073-83255074
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10501541	0.82[ASN][1000 genomes]
rs11233659	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11601201	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12271855	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12275432	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12279615	0.82[ASN][1000 genomes]
rs12287099	0.82[ASN][1000 genomes]
rs12287103	0.82[ASN][1000 genomes]
rs12287201	0.82[ASN][1000 genomes]
rs12288797	0.82[ASN][1000 genomes]
rs12294748	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1367983	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1541891	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145339	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145376	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17522327	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835762	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35393309	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4584604	0.82[ASN][1000 genomes]
rs57437963	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60846553	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61568057	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67025044	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68058076	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72946636	0.82[ASN][1000 genomes]
rs7927929	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9804591	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59824513	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83251000-83257600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr11:83251000-83257600	Enhancers	Brain Anterior Caudate	brain
3	chr11:83251000-83258200	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83251200-83257400	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:83251200-83258200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:83251400-83255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:83251400-83255600	Enhancers	Fetal Brain Male	brain
8	chr11:83251400-83257600	Enhancers	Brain Angular Gyrus	brain
9	chr11:83251600-83255400	Weak transcription	Small Intestine	intestine
10	chr11:83251600-83258200	Enhancers	Brain Substantia Nigra	brain
11	chr11:83252600-83256600	Weak transcription	Fetal Lung	lung
12	chr11:83252800-83258200	Enhancers	Fetal Intestine Large	intestine
13	chr11:83253600-83258000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:83254000-83256200	Enhancers	Hela-S3	cervix
15	chr11:83254000-83257000	Enhancers	Fetal Muscle Leg	muscle
16	chr11:83254200-83256200	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:83254200-83256600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:83254400-83256200	Enhancers	Fetal Intestine Small	intestine
19	chr11:83254400-83257200	Enhancers	Fetal Stomach	stomach
20	chr11:83254600-83256600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:83254800-83256200	Enhancers	NHEK	skin
22	chr11:83254800-83256400	Weak transcription	Fetal Brain Female	brain
23	chr11:83254800-83256800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:83255000-83255400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:83255000-83255600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:83255000-83256400	Weak transcription	Brain Germinal Matrix	brain

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