Variant report

Variant	rs11601201
Chromosome Location	chr11:83251494-83251495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83245755..83248729-chr11:83250571..83253175,2	MCF-7	breast:
2	chr11:82996768..82998451-chr11:83250525..83253296,2	K562	blood:

Variant related genes	Relation type
ENSG00000255234	Chromatin interaction
ENSG00000137500	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10501541	0.86[ASN][1000 genomes]
rs11233631	0.84[ASN][1000 genomes]
rs11233634	0.84[ASN][1000 genomes]
rs11233637	0.84[ASN][1000 genomes]
rs11233639	0.84[ASN][1000 genomes]
rs11233640	0.84[ASN][1000 genomes]
rs11233659	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12271855	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12275432	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12279615	0.86[ASN][1000 genomes]
rs12287099	0.86[ASN][1000 genomes]
rs12287103	0.86[ASN][1000 genomes]
rs12287201	0.86[ASN][1000 genomes]
rs12288797	0.86[ASN][1000 genomes]
rs12294748	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12295733	0.84[ASN][1000 genomes]
rs1367983	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432050	0.84[ASN][1000 genomes]
rs1541891	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145339	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17145376	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17461216	0.84[ASN][1000 genomes]
rs17522327	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835762	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043208	0.81[ASN][1000 genomes]
rs35393309	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4584604	0.86[ASN][1000 genomes]
rs57437963	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59824513	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60846553	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61568057	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67025044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68058076	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123816	0.84[ASN][1000 genomes]
rs72946636	0.86[ASN][1000 genomes]
rs7927929	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9787866	0.84[ASN][1000 genomes]
rs9804591	0.86[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83245200-83255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83245400-83251600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83250000-83253600	Weak transcription	Psoas Muscle	Psoas
4	chr11:83250800-83251600	Enhancers	Fetal Brain Female	brain
5	chr11:83250800-83252400	Enhancers	Hela-S3	cervix
6	chr11:83251000-83252000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:83251000-83252000	Enhancers	Fetal Stomach	stomach
8	chr11:83251000-83252600	Enhancers	Fetal Lung	lung
9	chr11:83251000-83257600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:83251000-83257600	Enhancers	Brain Anterior Caudate	brain
11	chr11:83251000-83258200	Enhancers	Brain Hippocampus Middle	brain
12	chr11:83251200-83251600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:83251200-83251800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:83251200-83252800	Weak transcription	Fetal Intestine Small	intestine
15	chr11:83251200-83257400	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:83251200-83258200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr11:83251400-83251600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:83251400-83251600	Enhancers	Colon Smooth Muscle	Colon
19	chr11:83251400-83251600	Enhancers	Small Intestine	intestine
20	chr11:83251400-83251800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr11:83251400-83251800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:83251400-83251800	Enhancers	Fetal Muscle Leg	muscle
23	chr11:83251400-83251800	Enhancers	Stomach Smooth Muscle	stomach
24	chr11:83251400-83255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:83251400-83255600	Enhancers	Fetal Brain Male	brain
26	chr11:83251400-83257600	Enhancers	Brain Angular Gyrus	brain

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