Variant report

Variant	rs11233637
Chromosome Location	chr11:83196381-83196382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:83196325-83196430	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
DLG2	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233631	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233659	0.90[CEU][hapmap];0.84[ASN][1000 genomes]
rs11601201	0.84[ASN][1000 genomes]
rs12271855	0.89[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12273919	0.84[CEU][hapmap]
rs12279615	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12280583	0.81[CEU][hapmap]
rs12287099	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287103	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287201	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12290090	0.85[CEU][hapmap]
rs12291733	0.85[CEU][hapmap]
rs12294748	0.80[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12295733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367983	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs1367986	0.85[CEU][hapmap]
rs1432050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541891	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17145339	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17145376	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs17461216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17522327	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1835762	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2043208	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35393309	0.84[ASN][1000 genomes]
rs4584604	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57437963	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61568057	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs67025044	0.84[ASN][1000 genomes]
rs68058076	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7103498	0.84[CEU][hapmap]
rs7123816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946636	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927929	0.84[ASN][1000 genomes]
rs9787813	0.84[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9787866	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804591	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11233637	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83187200-83196600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:83192200-83196800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83192800-83196400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:83192800-83197400	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83192800-83211200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83193000-83197600	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83195000-83197800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:83195200-83196600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:83195200-83197800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:83195400-83196600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:83195400-83196600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:83195400-83201600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:83195600-83197800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr11:83196000-83197400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:83196000-83197600	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links